Articles by tag: genomics

Aggregate peak analysis with Hi-C data

Hi-C data analysis is still a relatively new field in genomics. The data itself is quite large and expensive to make, which means datasets and exploration of the data is still immature, compared to other technologies like RNA-seq. Here, I discuss aggregate peak analysis, a commonly-used and poorly-documented analytical technique to verify identified features in Hi-C data.

Creating simple genome annotation tables

Working with annotated genomes is not always an easy process. Here, I detail how to easily create tabular annotation data from GENCODE that can be easily used in any analysis.